Reset duplicate node name numbering when scene is closed (Alex). Fix extra '.nii.gz' that gets added to file name on scene save (Alex/Nicole). Change to use numpy 1.4.1 from slicer3 mirror rather than relying on (which oddly now points to a git repository). Node Attributes are not automatically saved/loaded on Slicer3 (they are on Slicer4). Fix incorrect warnings about missing files (itclConfig.sh, iwidgets.tcl, BLT24.dll) on windows builds.ĭONE: Issues fixed for inclusion in Slicer 3.6.4. Workaround in the extension script to support intermittent plastimatch build failures on mac os 10.5 (Steve, Greg). Optimization for reslice behavior of prostate data, (Steve). Fix numpy builds on some windows systems by migrating to clapack (Steve, Dave). Create distribution binaries and extensions (Steve). Migrate latest version of GrowCut into release branch (Harini and Jim). CompareView slice spacing issue 936 (Jim). BRAINSResample is not available as a shared library (C++ symbol name in. Increase the stored resolution of fiducials (Christoph ViewVC). Generate Robust MRI brain registration for EMSegmenter (Kilian, Dominik). 
commandlines currently cannot execute links to files with http address (Wendy). Move Slicer3Helper::AddDataIOToScene to ApplicationLogic 1033 (Wendy). This status is set inside Base/Logic/vtkDataIOManagerLogic before data is loaded into slicer. Plan right now is to create a method on MRMLScene->DataIOManager that will check for any data transfer with a status vtkDataTransfer::Failed. Request to compute checksum or md5sum and save as part of any storable node has registered as a feature request in Mantis. Interface settings in Application settings are not saved (TBD). 
Fix version information for extension build/discovery bug 1123 (Steve).Adjust the appearance of slices in 3D view 1061 (Steve) - may not be in 3.6 at all, but should be in 4.Lock fiducials when editor effects are active (Steve) (committed to trunk as r16373, migrate to 3.6 if all works as expected).Model/Slice intersections after scene load (fixed in trunk - migrate to release branch when tested).Integrate SPECTRE plugin as an extension once MIPAV is open sourced (Nicole).volume rendering with rotated ROI is not handled correctly.TODO: Issues to fix for the 3.6.4 patch release 4 DONE: Issues included in 3.6.1 patch release - in Slicer-3-6 branch by 6pm.
3.1 DONE: Issues fixed for inclusion in Slicer 3.6.2. 3 TODO: Issues to fix for the 3.6.2 patch release Oct 22/10. 2.1 DONE: Issues fixed for inclusion in Slicer 3.6.3 - included in release builds of March 4, 2011. 2 TODO: Issues to fix for the 3.6.3 patch release. 1.1 DONE: Issues fixed for inclusion in Slicer 3.6.4. 1 TODO: Issues to fix for the 3.6.4 patch release.
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